[Biopython-dev] [Bug 2866] SQLite support for BioSQL

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Tue Jul 7 13:59:17 UTC 2009


------- Comment #6 from biopython-bugzilla at maubp.freeserve.co.uk  2009-07-07 09:59 EST -------
(In reply to comment #5)
> It's derived from the MySQL schema. I'll mention that on the BioSQL
> bug when I upload the schema there.


> Good catch with Python2.4. Grrr old versions, I like those conditional
> expressions too much.

I haven't really used them, some of "my" machines are still on Python 2.4,
but can see the appeal - especially within a list or generator comprehension.

> I think test_BioSQL should default to the in-memory version of SQLite, so
> completely agreed. This is most likely to work out of the box on a default
> system.


> Do you want me to check this in with the 2.4 fix? Or should we wait
> until after 1.51?

At least wait until 1.51 is out, and we've had some feedback from Hilmar.

I would prefer to wait until the SQLite schema is at least in the BioSQL
repository, and ideally publicly released. I had the impression from
Hilmar at BOSC that BioSQL 1.0.2 could be out later this year, so this
may not take that long.


Configure bugmail: http://bugzilla.open-bio.org/userprefs.cgi?tab=email
------- You are receiving this mail because: -------
You are the assignee for the bug, or are watching the assignee.

More information about the Biopython-dev mailing list