[Biopython-dev] [Bug 2740] Wise test fails with wise 2.4.1

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Fri Jan 23 12:28:05 UTC 2009


biopython-bugzilla at maubp.freeserve.co.uk changed:

           What    |Removed                     |Added
             Status|NEW                         |RESOLVED
         Resolution|                            |FIXED

------- Comment #2 from biopython-bugzilla at maubp.freeserve.co.uk  2009-01-23 07:28 EST -------
This should be fixed in CVS, see:

Tests/test_Wise.py revision 1.7
Tests/output/test_Wise revision 1.3

All I have done is made the unit test accept the old output, or the slightly
different output from wise 2.4.1 - the main Biopython code is unchanged.

>From the help text (just run dnal with no arguments), it appears the gap
penalties have not changed - so the differing alignments but be an algorithm
change of some sort.

Another small difference is with wise 2.4.1, even in quiet mode, dnal starts
its output by printing the score.

Thank you for reporting this,


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