[Biopython-dev] [Bug 2738] New: Speed up GenBank parsing, in particular location parsing

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Wed Jan 21 18:22:47 UTC 2009


           Summary: Speed up GenBank parsing, in particular location parsing
           Product: Biopython
           Version: Not Applicable
          Platform: All
        OS/Version: All
            Status: NEW
          Severity: enhancement
          Priority: P2
         Component: Main Distribution
        AssignedTo: biopython-dev at biopython.org
        ReportedBy: biopython-bugzilla at maubp.freeserve.co.uk

This is an enhancement "bug", for trying to improve the speed of parsing
GenBank files WITHOUT any functionality changes.  From previous profiling, I
have found that the location parsing looks like an easy target.  However, this
code is non-trivial so we should proceed with caution.

Possible patch to follow...

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