[Biopython-dev] [Bug 2731] New: Adding .upper() and .lower() methods to the Seq object

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Mon Jan 12 14:31:22 UTC 2009


           Summary: Adding .upper() and .lower() methods to the Seq object
           Product: Biopython
           Version: Not Applicable
          Platform: All
        OS/Version: All
            Status: NEW
          Severity: enhancement
          Priority: P2
         Component: Main Distribution
        AssignedTo: biopython-dev at biopython.org
        ReportedBy: biopython-bugzilla at maubp.freeserve.co.uk
 BugsThisDependsOn: 2532
OtherBugsDependingO 2351

As part of making the Seq object more string like (Bug 2351), it would be nice
to support the .upper() and .lower() methods.

Doing this elegantly will require different case versions of the alphabets (see
Bug 2532), perhaps by adding (private) upper and lower methods to the Alphabet
object itself.

Alternatively, we can handle this without adding new Alphabets by mapping the
fixed case IUPAC alphabets to case-less generic alphabets.

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