[Biopython-dev] [Bug 2671] Including GenomeDiagram in the main Biopython distribution

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Sun Jan 4 22:09:47 UTC 2009


------- Comment #32 from biopython-bugzilla at maubp.freeserve.co.uk  2009-01-04 17:09 EST -------
(In reply to comment #30)
> (In reply to comment #29)
> > 
> > I propose that in Biopython 1.50 we support both "colour" and "color",
> > but for Biopython 1.51 we add deprecation warnings when "colour" is used.
> > 
> > We should probably do the same thing for "centre" and "center" as well...
> > 
> I agree.  We should encourage use of the US spelling in the documentation, to
> catch those new to GD. This approach provides a window for conversion of old
> GD scripts for previous users, which is a good thing.

I've updated CVS to switch from centre to centre, with properties setup to
allow access under the old spellings, and where I thought it appropriate I've
included both spellings in argument lists.  Another set of eyes to check this
wouldn't hurt.

I'm leaving this bug open until we've done the documentation (see my comment

There is also the issue of Bug 2705 for the AT and GC content and skew
functions and any windowing function to help plot these in GenomeDiagram.

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