[Biopython-dev] [Bug 2382] Generic Roche or GSFlex "FASTA" parser

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2382





------- Comment #14 from biopython-bugzilla at maubp.freeserve.co.uk  2009-02-19 12:54 EST -------
Enhancement Bug 2767 would add support to Bio.SeqIO for the FASTA like QUAL
file format used by both Sanger and Roche.  See:
http://www.bioperl.org/wiki/Qual_sequence_format
http://www.cees.uio.no/research/facilities/roche454/resultsfiles.html

This would not solve Jared's original request for a generic FASTA like parsing
framework - although it would solve the particular example of dealing with a
pair of FASTA and QUAL files.


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