[Biopython-dev] Sequences and simple plots

Peter biopython at maubp.freeserve.co.uk
Thu Sep 25 16:15:54 UTC 2008


Hi all,

I've just added a couple of Bio.SeqIO with pylab examples to the cookbook
chapter of the Biopython tutorial.

The first shows a histogram of sequence lengths in a FASTA file (based
having recently done this for some real assembly data).
http://biopython.org/DIST/docs/tutorial/images/hist_plot.png

The second is based on the GC% example we used for the BOSC 2008
presentation (see http://biopython.org/wiki/Documentation#Presentations
for the original). http://biopython.org/DIST/docs/tutorial/images/gc_plot.png

If anyone has any suggestions for similar examples let me know (with code
would be great - but even a nice idea is worthwhile).

Peter



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