[Biopython-dev] Biopython 1.49 beta released

Peter biopython at maubp.freeserve.co.uk
Thu Nov 20 10:55:57 UTC 2008


OK,

Progress since Biopython 1.49 beta was released:

> We've had a few Numeric -> NumPy bugs reported,
>
> http://bugzilla.open-bio.org/show_bug.cgi?id=2658
> Bug 2658 - Bio.PDB.Neighborsearch

Fixed.

> http://bugzilla.open-bio.org/show_bug.cgi?id=2649
> Bug 2649 - Bio.KDTree (probably fixed)

No confirmation from the original reporter, but looks OK.

> I don't think we should release Biopython 1.49 final until these are
> resolved - but if there was interest I could put out a second beta.

No-one seems to want a second beta, which saves me some time :)

There have been a few other bugs reported and fixed in the meantime,
right now the only thing I think holding up the release of Biopython
1.49 is:

http://bugzilla.open-bio.org/show_bug.cgi?id=2677
Bug 2677 - BioSQL seqfeature enhancements

Is there anything else?

Peter



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