[Biopython-dev] [BioPython] Problems with Emboss.Primer3

Peter Cock p.j.a.cock at googlemail.com
Fri Nov 14 11:18:43 UTC 2008


On Fri, Nov 14, 2008 at 10:37 AM, Stefanie Lück
<lueck at ipk-gatersleben.de> wrote:
> Thanks for the hints!
> ...
> It gives as well as at the command line:
>
> "
> Command line:
> eprimer3 -sequence p3input.txt -outfile out.pr3 -target 50,500
> Return code:
> 1
> Errors:
>
>    EMBOSS An error in ajnam.c at line 1991:
>
> EMBOSSWIN environment variable not defined
>
> Messages
>
> "
> Any suggestions?

This doesn't seem to be a Biopython problem, but an EMBOSS
installation or configuration problem.  What version of EMBOSS do you
have?  Maybe try upgrading to version 6?

Peter




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