[Biopython-dev] [Bug 2497] New: Unit tests do not cover Bio.Blast.NCBIWWW.qblast()

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2497

           Summary: Unit tests do not cover Bio.Blast.NCBIWWW.qblast()
           Product: Biopython
           Version: 1.45
          Platform: All
        OS/Version: All
            Status: NEW
          Severity: normal
          Priority: P2
         Component: Main Distribution
        AssignedTo: biopython-dev at biopython.org
        ReportedBy: biopython-bugzilla at maubp.freeserve.co.uk


Recent NCBI changes to use BLAST 2.2.18+ with their online API broke our XML
parser.  This was actually reported via the mailing list and fixed quickly.

Adding an online unit test to explicitly run a few queries with
Bio.Blast.NCBIWWW.qblast() and parse the XML output could have caught this
earlier.

I'm going to attach a proposed additional unit test to do this,
test_NCBIWWW_online.py


-- 
Configure bugmail: http://bugzilla.open-bio.org/userprefs.cgi?tab=email
------- You are receiving this mail because: -------
You are the assignee for the bug, or are watching the assignee.