[Biopython-dev] [Bug 2497] New: Unit tests do not cover Bio.Blast.NCBIWWW.qblast()

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Fri May 9 11:21:33 UTC 2008


           Summary: Unit tests do not cover Bio.Blast.NCBIWWW.qblast()
           Product: Biopython
           Version: 1.45
          Platform: All
        OS/Version: All
            Status: NEW
          Severity: normal
          Priority: P2
         Component: Main Distribution
        AssignedTo: biopython-dev at biopython.org
        ReportedBy: biopython-bugzilla at maubp.freeserve.co.uk

Recent NCBI changes to use BLAST 2.2.18+ with their online API broke our XML
parser.  This was actually reported via the mailing list and fixed quickly.

Adding an online unit test to explicitly run a few queries with
Bio.Blast.NCBIWWW.qblast() and parse the XML output could have caught this

I'm going to attach a proposed additional unit test to do this,

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