[Biopython-dev] [Bug 2496] New: Bio.Blast.NCBIWWW.qblast() does not support RUN_PSIBLAST option

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Thu May 8 11:56:24 UTC 2008


           Summary: Bio.Blast.NCBIWWW.qblast() does not support RUN_PSIBLAST
           Product: Biopython
           Version: 1.45
          Platform: PC
        OS/Version: All
            Status: NEW
          Severity: normal
          Priority: P2
         Component: Main Distribution
        AssignedTo: biopython-dev at biopython.org
        ReportedBy: biopython-bugzilla at maubp.freeserve.co.uk
                CC: betainverse at gmail.com

Problem reported on the mailing list by Katie Edmonds.

We need to add the CGI option RUN_PSIBLAST to the Blast URL in order to support
PSI-BLAST.  However, the current Biopython code can't parse the RID from the
resulting HTML which needs another fix.

Patch to follow.

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