[Biopython-dev] [Bug 2531] Nexus and fasta parsers have a problem with identical taxa names

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Mon Jun 30 16:20:20 UTC 2008


------- Comment #8 from biopython-bugzilla at maubp.freeserve.co.uk  2008-06-30 12:20 EST -------

Looking back, the reason I was using the original_taxon_order list was I wanted
to get the sequences in their original order.  I see now that I can't use the
elements in this list as keys to the matrix because the matrix keys are the
modified taxon names.

Is there any way to get the modified taxon names in the original order?  Other
than looping over original_taxon_order and repeating your naming algorithm?


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