[Biopython-dev] [Bug 2530] Bio.Seq.translate() treats invalid codons as stops

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Sun Jun 29 02:37:01 UTC 2008


------- Comment #4 from biopython-bugzilla at maubp.freeserve.co.uk  2008-06-28 22:37 EST -------
Created an attachment (id=954)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=954&action=view)
Rough patch to Bio/Data/CodonTable.py

This includes some self testing, but needs further validation before being
trusted.  For example, is it enough to compare just pairs of unambiguous
start/stop codons when generating the set of possible ambiguous start/stop

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