[Biopython-dev] [Bug 2090] Blast.NCBIStandalone BlastParser fails with blastall 2.2.14

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Thu Jun 26 23:47:14 UTC 2008


------- Comment #16 from biopython-bugzilla at maubp.freeserve.co.uk  2008-06-26 19:47 EST -------
Created an attachment (id=952)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=952&action=view)
Patch to Bio/Blast/NCBIStandalone.py

This is a very rough attempt at fixing multiquery BLAST output from recent
versions of NCBI BLAST.

It seems to work for the file I tested, but breaks the final part of the unit
test due to the alignments shown as "Flat Query-Anchored with(out) Identities",
described here:


See also unit test files bt005 and bt045

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