[Biopython-dev] [Bug 2375] Coalescent support through Simcoal2

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Sat Jun 21 04:19:59 UTC 2008


mdehoon at ims.u-tokyo.ac.jp changed:

           What    |Removed                     |Added
             Status|RESOLVED                    |REOPENED
         Resolution|FIXED                       |

------- Comment #22 from mdehoon at ims.u-tokyo.ac.jp  2008-06-21 00:19 EST -------
(In reply to comment #15)
> The solution in Bio/PopGen/SimCoal/__init__.py to find builtin_tpl_dir is not
> so beautiful, but on the other hand I don't see a better way to do it.

I ran into the same problem with Bio/Entrez, which needs a bunch of DTD files
in Bio/Entrez/DTDs/. The attached patch to setup.py modifies the build command
such that the data files are copied to the build directory when running "python
setup.py build". This solves the problem with Bio.Entrez, and should also solve
the problem with Bio/PopGen/SimCoal without using the workaround in
Bio/PopGen/SimCoal/__init__.py. Can you guys try this patch on the platforms
and python versions you have access to? Just to make sure I didn't miss
anything before committing to CVS.

Recently there have been quite a lot of updates to CVS, so you may need to
start from a fresh CVS checkout.

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