[Biopython-dev] [Bug 2468] Tutorial needs a fix: Bio.WWW.NCBI

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Sun Jun 15 07:03:18 UTC 2008


mdehoon at ims.u-tokyo.ac.jp changed:

           What    |Removed                     |Added
             Status|NEW                         |RESOLVED
         Resolution|                            |FIXED

------- Comment #6 from mdehoon at ims.u-tokyo.ac.jp  2008-06-15 03:03 EST -------
I created a subsection Examples to the tutorial chapter on Bio.Entrez, and
the example from section 2.5 and Martin's taxonomy example to it. With the
Bio.Entrez currently in CVS, finding the lineage works as follows:

>>> handle = Entrez.esearch(db="Taxonomy", term="Cypripedioideae")
>>> record = Entrez.read(handle)
>>> record["IdList"]
>>> handle = Entrez.efetch(db="Taxonomy", id="158330", retmode='xml')
>>> records = Entrez.read(handle)
>>> records[0]['Lineage']
'cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina;
 Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta;
 Liliopsida; Asparagales; Orchidaceae'

Configure bugmail: http://bugzilla.open-bio.org/userprefs.cgi?tab=email
------- You are receiving this mail because: -------
You are the assignee for the bug, or are watching the assignee.

More information about the Biopython-dev mailing list