[Biopython-dev] [Bug 2535] Support for PIR / NBRF format in Bio.SeqIO

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2535





------- Comment #1 from biopython-bugzilla at maubp.freeserve.co.uk  2008-07-02 12:30 EST -------
Created an attachment (id=964)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=964&action=view)
New file Bio/SeqIO/PirIO.py

Note that the details of storing the sequence type may need tweaking for better
agreement with the de-facto conventions from the GenBank parser.

As part of this the following dictionary may be useful, from Bio/NBRF/ValSeq.py

valid_sequence_dict = { "P1": "complete protein", "F1": "protein fragment", \
    "DL": "linear DNA", "DC": "circular DNA", "RL": "linear RNA", \
    "RC":"circular RNA", "N3": "transfer RNA", "N1": "other"
    }


-- 
Configure bugmail: http://bugzilla.open-bio.org/userprefs.cgi?tab=email
------- You are receiving this mail because: -------
You are the assignee for the bug, or are watching the assignee.