[Biopython-dev] [Bug 2709] New: test_GenomeDiagram fails under Linux

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Fri Dec 12 16:09:27 UTC 2008


http://bugzilla.open-bio.org/show_bug.cgi?id=2709

           Summary: test_GenomeDiagram fails under Linux
           Product: Biopython
           Version: Not Applicable
          Platform: PC
        OS/Version: Linux
            Status: NEW
          Severity: minor
          Priority: P4
         Component: Unit Tests
        AssignedTo: biopython-dev at biopython.org
        ReportedBy: bsouthey at gmail.com


Under my Linux 64-bit system test_GenomeDiagram fails but the other related
tessts 'pass' as reportlab is not available:

test_GenomeDiagram ... ERROR                                                    
test_GraphicsChromosome ... skipping. Install reportlab if you want to use
Bio.Graphics.
ok
test_GraphicsDistribution ... skipping. Install reportlab if you want to use
Bio.Graphics.
ok
test_GraphicsGeneral ... skipping. Install reportlab if you want to use
Bio.Graphics.
ok


======================================================================
ERROR: test_GenomeDiagram                                             
----------------------------------------------------------------------
Traceback (most recent call last):                                    
  File "run_tests.py", line 125, in runTest                           
    self.runSafeTest()                                                
  File "run_tests.py", line 138, in runSafeTest                       
    cur_test = __import__(self.test_name)                             
  File "test_GenomeDiagram.py", line 21, in <module>                  
    raise MissingExternalDependencyError(\                            
NameError: name 'MissingExternalDependencyError' is not defined       

----------------------------------------------------------------------


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