[Biopython-dev] [Bug 2671] Including GenomeDiagram in the main Biopython distribution

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2671





------- Comment #13 from lpritc at scri.sari.ac.uk  2008-12-01 10:51 EST -------
(In reply to comment #11)
> Unit Test
> =========
> The unit test included, test_GenomeDiagram.py adds yet another GenBank file to
> the test suite, NC_005213.gb (Nanoarchaeum equitans, 490885 bp) which at 1.2 MB
> is best avoided.  I would prefer we used existing GenBank files already
> included in Biopython which would serve just as well.

That's a good idea.

> Also, the code to parse the GenBank file does so via Bio.GenBank, and I would
> prefer to use Bio.SeqIO here.

I noticed that in revising the documentation, but hadn't got around to doing
anything about it, except in the example code.


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