[Biopython-dev] kdtree update

sam n samnemo at gmail.com
Mon Apr 14 22:06:46 UTC 2008


I made some changes to the C++ side of Biopython's KDTree that allow one to
perform a nearest-neighbor search without specifying a range up-front. I found
this saved a considerable amount of CPU time for the problem I was using it for.
It might be useful to other people so I can send the update, which is based on
http://www.google.com/codesearch?hl=en&q=+kdtree+show:b099E8j0eYY:M9X8aTw_p7E:Tn8Xj-OBPYY&sa=N&cd=4&ct=rc&cs_p=ftp://ftp.diku.dk/diku/users/martinz/tabu.tar.gz&cs_f=kdtree.c#first

Where do I send it to? This mailing list?

Thanks
Sam



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