[Biopython-dev] [Bug 2366] Ambiguous nucleotides in (Reverse)complement functions in Bio.Seq

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Fri Sep 14 10:25:58 UTC 2007


http://bugzilla.open-bio.org/show_bug.cgi?id=2366





------- Comment #2 from biopython-bugzilla at maubp.freeserve.co.uk  2007-09-14 06:25 EST -------
Part of my updated test_seq.py unit test fails when run with the entire test
suite; It appears some other unit test is polluting the
Bio.Data.IUPACData.ambiguous_dna_values dictionary.

Adding this to test_seq.py (after applying the patch) seems to fix this.

#When run the full test suite, some other unit test is polluting this dict:
for ambig_char in ["-", "?"] :
    if ambig_char in ambiguous_dna_values :
        del ambiguous_dna_values[ambig_char]


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