[Biopython-dev] [Bug 2405] db_xref and UserWarning: XXX not recognised as database type: temporarily accepting key

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Tue Nov 27 11:16:25 UTC 2007


biopython-bugzilla at maubp.freeserve.co.uk changed:

           What    |Removed                     |Added
             Status|NEW                         |RESOLVED
         Resolution|                            |FIXED
            Summary|BioSQL gives UserWarning:   |db_xref and UserWarning: XXX
                   |... not recognised as       |not recognised as database
                   |database type: temporarily  |type: temporarily accepting
                   |accepting key               |key

------- Comment #3 from biopython-bugzilla at maubp.freeserve.co.uk  2007-11-27 06:16 EST -------
Fixed in CVS by removing the db_xref mapping.  This now follows BioPerl and
BioJava usage.

BioSQL/BioSeq.py revision 1.18
BioSQL/Loader.py revision 1.23
BioSQL/__init__.py revision 1.3

Both the BioSQL unit tests still pass.

[Also adding db_xref to the bug title to help anyone searching for this change
in future]

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