[Biopython-dev] [Bug 2411] Element access and slicing of DBSeq object (BioSQL's Seq object)

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Mon Nov 26 22:14:02 UTC 2007


------- Comment #2 from biopython-bugzilla at maubp.freeserve.co.uk  2007-11-26 17:14 EST -------
The element access only failed with an IndexError when attempted to get the
zero element by using an index of the negative length (i.e. a corner case).

That is fixed in BioSQL/BioSeq.py revision 1.15

Updated unit test in Test/test_BioSQL_SeqIO.py revision 1.6 checks basic
element access and slicing with the DBSeq object - but does not yet attempt
slicing with a stride (step).

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