[Biopython-dev] BioSQL

Michiel De Hoon mdehoon at c2b2.columbia.edu
Tue Nov 20 10:26:02 UTC 2007

> On your system, I guess that MySQL is available but the
> username/password are wrong.  If we revert these to being undefined,
> then the test should fail as before with MissingExternalDependencyError.
> Can you check that easily?  I should probably add an error handler to
> look for permission denied too...

If I comment out DBDRIVER and DBTYPE in setup_BioSQL.py, then the test fails
with a MissingExternalDependencyError as before.


Michiel de Hoon
Center for Computational Biology and Bioinformatics
Columbia University
1150 St Nicholas Avenue
New York, NY 10032

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