[Biopython-dev] [Bug 2390] Error importing Swiss Prot in BioSQL

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Mon Nov 5 19:49:40 UTC 2007


------- Comment #9 from biopython-bugzilla at maubp.freeserve.co.uk  2007-11-05 14:49 EST -------
Issue One
Missing %s in BioSQL/Loader.py approx line 240.  I think that as you suggest,
we should add a %s here.

This was removed in CVS version 1.18 (June 2007) by Michiel while working on
bug 1982.  I think only one %s was meant to be removed (when the taxon_id was
removed), but it got done twice with the two related CVS commits.

Issue Two
The cursor problem.  I don't know if my suggestion in comment 7 is working or
not - it could be something else is going wrong to result in nothing in the

Issue Three
Missing table argument in BioSQL/DBUtils.py line 23, I agree with you and have
fixed this in CVS revision 1.4.

In normal use the object is subclassed and the broken last_id method would
never have been called.

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