[Biopython-dev] PATCH: NumPy support for BioPython

Michiel Jan Laurens de Hoon mdehoon at c2b2.columbia.edu
Wed Mar 14 15:51:31 UTC 2007

Ed Schofield wrote:
> Ah, yes, I understand. And I've now re-read your previous post and now 
> understand your point there about clustermodule.c too. So I've changed 
> all (flags & CONTIGUOUS) instances to use PyArray_ISCONTIGUOUS() in my 
> patch and updated it at
> http://edschofield.com/biopython-numpy-support.patch 

OK, thanks. I have fixed clustermodule.c in Biopython's CVS to use 
PyArray_ISCONTIGUOUS instead of (flags & CONTIGUOUS).
I'll look at this patch in more detail after the upcoming release is out.


Michiel de Hoon
Center for Computational Biology and Bioinformatics
Columbia University
1130 St Nicholas Avenue
New York, NY 10032

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