[Biopython-dev] Documentation for new Blast parser
Michiel Jan Laurens de Hoon
mdehoon at c2b2.columbia.edu
Sun Mar 11 02:40:26 UTC 2007
> I see you have started to mention Bio.SeqIO in the Blast documentation -
> is this a hint to get me to update section 2.4 "Parsing biological file
If you could do that, then that would be great. If you don't find the
time for it, I can also help you by grabbing what you have on your wiki
page. Feel free to change section 2.4 as you want -- I don't think
what's there is still very relevant to Biopython, and it probably scares
> I see you are editing the CVS file biopython/Doc/Tutorial.tex - I am
> happy working with LaTex so that shouldn't be a problem.
Note that it is not exactly LaTeX, but LaTeX with hevea added. Let me
know if you run into problems with hevea.
> I presume you run some flavour of latex to html on it, and then upload
> the file to website somehow...
Hevea takes care of this; see the Makefile in biopython/Doc.
> Back to the BLAST tutorial, quoting Section 3.1 Running BLAST locally:
> Minor style point: Using the bullet points makes it look like three
> advantages (when the introduction says two). I wouldn't use a bullet
> point for the proprietary/unpublished data paragraph.
Ha, you're right. I should work on my counting skills.
It's fixed now.
Michiel de Hoon
Center for Computational Biology and Bioinformatics
1130 St Nicholas Avenue
New York, NY 10032
More information about the Biopython-dev