[Biopython-dev] [Bug 2340] New: SProt.py fails to parse the current Swiss-Prot version 54.0

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Thu Jul 26 14:52:38 UTC 2007


http://bugzilla.open-bio.org/show_bug.cgi?id=2340

           Summary: SProt.py fails to parse the current Swiss-Prot version
                    54.0
           Product: Biopython
           Version: 1.43
          Platform: All
        OS/Version: Linux
            Status: NEW
          Severity: normal
          Priority: P2
         Component: Main Distribution
        AssignedTo: biopython-dev at biopython.org
        ReportedBy: gould at embl.de


Hi, 

I'm running on a red hat linux box on python 2.3.4 and am trying to parse any
swiss-prot record but the parser just seems to bomb out not throwing an error
of where it actually fails. I'm guessing it has to do with the Release 54.0 of
24-Jul-07 of UniPROT with the addition of the new line type PE??


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