[Biopython-dev] [Bug 2176] XML Blast parser: miscellaneous bug fixes and cleanup

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http://bugzilla.open-bio.org/show_bug.cgi?id=2176





------- Comment #1 from jmjoseph at andrew.cmu.edu  2007-01-03 16:50 -------
Created an attachment (id=533)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=533&action=view)
Patch to NCBIXML.py

These patches to NCBIXML and Record:
 * replace query_letters with query_length,
 * use tuples for _hsp.identities, positives, and gaps
 * store _hsp.align_length
 * separate the hit id and hit def elements. title is retained


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