[Biopython-dev] Moving from Numeric to NumPy
biopython-dev at maubp.freeserve.co.uk
Sat Feb 3 19:41:43 UTC 2007
I've compiled a rough list of modules using Numeric with the aid of grep.
As far as I can tell, we have two big lumps of code (Michiel's
Bio.Cluster module and Thomas' Bio.PDB and SVDSuperimposer modules) plus
a selection of miscellaneous bits.
Thomas & Michiel - have you looked or made plans to moving your code?
Also, do we have any active developers familiar with the following modules:
Jeffrey Chang (no longer active?):
Harry Zuzan (no longer active?):
Affy/CelFile.py and Affy/celmodule.cc
KDTree/KDTree.py (includes C++ code so tricky)
Some of which could be converted "by hand" almost trivially (e.g.
distance.py), but see also:
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