[Biopython-dev] [Bug 2353] Swissprot (UniProt) files with ** lines fail to parse

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Fri Aug 31 11:52:24 UTC 2007


------- Comment #13 from biopython-bugzilla at maubp.freeserve.co.uk  2007-08-31 07:52 EST -------
That grep output was a nice idea.  It looks like while most cases are FR, **,
SQ there are several variations to cover.

Please try Bio/SwissProt/SProt.py revision 1.41, which should cope with the **
lines anywhere (except some positions within references).  This is the only
file changed, so you don't need to worry about updating anything else in

I have tried this on the entire files 27.M_thermoautotrophicum.dat and
121.T_whipplei_Twist.dat from

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