[Biopython-dev] [Bug 1885] New: KEGG Compound db format changes

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Fri Oct 21 12:58:45 EDT 2005


           Summary: KEGG Compound db format changes
           Product: Biopython
           Version: Not Applicable
          Platform: All
        OS/Version: All
            Status: NEW
          Severity: normal
          Priority: P2
         Component: Main Distribution
        AssignedTo: biopython-dev at biopython.org
        ReportedBy: edmonds at fas.harvard.edu

Several new fields have been added (apparently including mass, comment,
reference, remark, and glycan), structures are represented in a different
format, not all enzymes are listed with a enzyme role component, etc.

I'll post some new test cases and a starting point for a new compound_format.py
that at least won't choke on anything currently in the db.  I've also added a
mass field to record scanner.

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