[Biopython-dev] Re: [BioPython] documentation issues

[Michiel Jan Laurens de Hoon]

andrea rossi wrote:
>     from Bio import GenBank
> 
>     gi_list = GenBank.search_for("Opuntia AND rpl16")
>     print " gi_list[0] ", gi_list[0]
> 
> I get the message:
> 
>     gi_list[0]  Error: Sequence Viewer does not have any Presentations
> for code='uilist_text'
> 
> instead of:
> 
>    ['6273291', '6273290', '6273289', '6273287', '6273286', '6273285',
> '6273284']

It seems that NCBI no longer accepts the "uilist" identifier. E.g. try the url

http://www.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?retmode=text&tool=EUtils_P
ython_client&db=nucleotide&email=biopython-dev%40biopython.org&rettype=uilist&id
=6273291

Does anybody know what this should be?


-- 
Michiel de Hoon, Assistant Professor
University of Tokyo, Institute of Medical Science
Human Genome Center
4-6-1 Shirokane-dai, Minato-ku
Tokyo 108-8639
Japan
http://bonsai.ims.u-tokyo.ac.jp/~mdehoon