[Biopython-dev] Re: Work towards getting KDTree compiling

Jeffrey Chang jeffrey_chang at stanfordalumni.org
Fri May 14 11:47:54 EDT 2004

On May 14, 2004, at 11:13 AM, Brad Chapman wrote:
> I'd agree that a move to numarray makes the most sense. We need to
> move in the direction development is going. I'd like to make this
> something we can plan to do soon-ish so it can be tested and ready
> for the next release. Right now, it looks like the following code
> would need to be migrated:
> -> LogisticRegression -- Jeff?
> -> MarkovModel -- Jeff?
> -> NaiveBayes -- Jeff?
> -> distance -- Jeff?
> -> kNN -- Jeff?

Yes, these are mine, and I can upgrade them to use numarray.

> What I really don't want is to make people download both Numeric and
> numarray to use Biopython, so I'd hope to make a coordinated switch
> between releases. If we decide to do this, we can split up the tasks
> and have a go at it.

Sure -- let me know the plans!


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