[Biopython-dev] [Bug 1715] Bio.Blast.NCBIStandalone does not support standalone NCBI RPS-Blast (rpsblast) output

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Wed Dec 8 08:01:12 EST 2004


biopython-bugzilla at maubp.freeserve.co.uk changed:

           What    |Removed                     |Added
 Attachment #182 is|0                           |1
           obsolete|                            |

------- Additional Comments From biopython-bugzilla at maubp.freeserve.co.uk  2004-12-08 08:01 -------
Created an attachment (id=186)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=186&action=view)
Edited version of NCBIStandalone.py based on CVS revision 1.57

Replacement to my previous file, this time based on the current code from CVS.


(1) Removed some print statements left in by mistake

(2) Changes to _scan_database_report made in CVS by Jeff Chang for a BLASTN
2.2.9 problem reported by Sameet Mehta also cope with RPSBLAST output, so my
similar change is not needed.  See also CVS revision 1.55

(3) Did the doc string and parameters dictionary for the new rpsblast function
properly, trying to use the same names where possible from either blastall or

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