[Biopython-dev] [Bug 1689] New: Seq is broken in CVS

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=1689

           Summary: Seq is broken in CVS
           Product: Biopython
           Version: Not Applicable
          Platform: PC
        OS/Version: Linux
            Status: NEW
          Severity: normal
          Priority: P2
         Component: Main Distribution
        AssignedTo: biopython-dev at biopython.org
        ReportedBy: f.sohm at whsmithnet.co.uk
                CC: biopython-dev at biopython.org


Hi, 
 
 
The last modification in Bio.Seq to integrate the complement() and 
reverse_complement() break the module. 
 
Notably a seq.alphabet in place of self.alphabet block complement to work 
 
While I was at it I have made some modification to support lower case DNA. 
 
See in the attachement take what you like and discard the rest. 
 
Bye 
 
Fred



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