[Biopython-dev] [Bug 1684] New: Error in Compiling DNAUtils

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=1684

           Summary: Error in Compiling DNAUtils
           Product: Biopython
           Version: Not Applicable
          Platform: HP
        OS/Version: Linux
            Status: NEW
          Severity: blocker
          Priority: P2
         Component: Main Distribution
        AssignedTo: biopython-dev at biopython.org
        ReportedBy: mcolosimo at mitre.org


Compile errors in DNAUtils is blocking building and installing. Full output below.

gcc -DNDEBUG -O2 -g -pipe -march=i386 -mcpu=i686 -D_GNU_SOURCE -fPIC -fPIC -I/us
r/include/python2.2 -c Bio/Restriction/DNAUtils.c -o build/temp.linux-i686-2.2/D
NAUtils.o
Bio/Restriction/DNAUtils.c:99: syntax error before string constant
Bio/Restriction/DNAUtils.c:99: warning: data definition has no type or storage c
lass
Bio/Restriction/DNAUtils.c:105: syntax error before string constant
Bio/Restriction/DNAUtils.c:105: warning: data definition has no type or storage 
class
Bio/Restriction/DNAUtils.c:112: syntax error before string constant
Bio/Restriction/DNAUtils.c:112: warning: data definition has no type or storage 
class
Bio/Restriction/DNAUtils.c:118: `DNA_checkbases_doc' undeclared here (not in a f
unction)
Bio/Restriction/DNAUtils.c:118: initializer element is not constant
Bio/Restriction/DNAUtils.c:118: (near initialization for `DNAUtils_functions[0].
ml_doc')
Bio/Restriction/DNAUtils.c:118: initializer element is not constant
Bio/Restriction/DNAUtils.c:118: (near initialization for `DNAUtils_functions[0]'
)
Bio/Restriction/DNAUtils.c:119: `DNA_complement_doc' undeclared here (not in a f
unction)
Bio/Restriction/DNAUtils.c:119: initializer element is not constant
Bio/Restriction/DNAUtils.c:119: (near initialization for `DNAUtils_functions[1].
ml_doc')
Bio/Restriction/DNAUtils.c:119: initializer element is not constant
Bio/Restriction/DNAUtils.c:119: (near initialization for `DNAUtils_functions[1]'
)
Bio/Restriction/DNAUtils.c:120: `DNA_rev_compl_doc' undeclared here (not in a fu
nction)
Bio/Restriction/DNAUtils.c:120: initializer element is not constant
Bio/Restriction/DNAUtils.c:120: (near initialization for `DNAUtils_functions[2].
ml_doc')
Bio/Restriction/DNAUtils.c:120: initializer element is not constant
Bio/Restriction/DNAUtils.c:120: (near initialization for `DNAUtils_functions[2]'
)
Bio/Restriction/DNAUtils.c:121: initializer element is not constant
Bio/Restriction/DNAUtils.c:121: (near initialization for `DNAUtils_functions[3]'
)
Bio/Restriction/DNAUtils.c:125: syntax error before "initDNAUtils"
error: command 'gcc' failed with exit status 1



------- You are receiving this mail because: -------
You are the assignee for the bug, or are watching the assignee.