[Biopython-dev] BioSQL: patch for discussion

Yves Bastide Yves.Bastide at irisa.fr
Fri Sep 12 12:57:15 EDT 2003

Hi everybody,

attached is a patch for bringing BioSQL to the current database schema, 
since Brad seems too busy graduating :)

One of the things to discuss is that I broke the current interface: I 
added the sequence version to the db items ids (breaking test_BioSQL's 
assert item_ids == ['AF297471', 'AJ237582', 'L31939', 'M81224', 
'X55053', 'X62281']).  I think this is necessary, since accession 
numbers are not guaranteed unique...

Another breakage vis-à-vis the test suite is that "no strand info" is 
dignified by None instead of 0.

Breaking-the-testsuite-ly yr's,

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