[Biopython-dev] Something wrong with Martel?

Jeffrey Chang jchang at jeffchang.com
Thu Jul 24 12:15:03 EDT 2003

Yep, it looks like something might be wrong with Martel now.

Andreas, this looks like it might be related to the switch over to 
using a dict object?  Could you take a look at it?


On Thursday, July 24, 2003, at 07:23  AM, Yair Benita wrote:

> I am trying to use Martel to make a parser but something appears to be
> wrong.
> First, the test fails after building:
> ###### running tests in test_IterParser ###############
> ---> I skip all the line until the last:
>   File "/Volumes/Applications/CVS/biopython/Martel/LAX.py", line 101, 
> in
> __getattr__
>     raise AttributeError(name)
> AttributeError: data
> I think this is something in the test file and not in the Martel code
> because all my other Martel scripts work.
> Second, trying to run the same script as Andrew wrote in the Readme
> (attached), I only get:
> <?xml version="1.0" encoding="iso-8859-1"?>
> Basically nothing is executed after the command: 
> parser.parse(open(File))
> Is something wrong on my system or something wrong with the Martel 
> code?
> Could anyone try to run the above script?
> Thanks,
> Yair
> -- 
> Yair Benita
> Pharmaceutical Proteomics
> Utrecht University
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