[Biopython-dev] biopython release redux

Jeffrey Chang jchang at smi.stanford.edu
Tue Jul 22 01:52:52 EDT 2003

Hello Everybody,

I'm back from my travels, so it's time to get back to building the 
biopython release.  It sounds like we're almost there, so I'm going to 
try to get it out by the end of the week.  Please let me know 
immediately if you're working on something, and the CVS repository is 
in an unreleasable state!

The regression tests seem to work for me (except for 1).  Please check 
it on your system and report any problems.

test_BioSQL is failing for me.  It can import BioSQL, but has trouble 
loading records in the database.  I don't believe I actually have a 
database running on this system.  Should the test be skipped if the 
database or BioSQL schema can't be found?

[sophie:~/remotecvs/biopython/Tests] jchang% python run_tests.py 
test_BioSQL ... FAIL

FAIL: test_BioSQL
Traceback (most recent call last):
   File "run_tests.py", line 148, in runTest
   File "run_tests.py", line 185, in runSafeTest
   File "run_tests.py", line 285, in compare_output
     assert expected_line == output_line, \
Output  : 'Load SeqRecord objects into a BioSQL database. ... ERROR\n'
Expected: 'Load SeqRecord objects into a BioSQL database. ... ok\n'
Ran 1 tests in 0.157s

FAILED (failures=1)


More information about the Biopython-dev mailing list