[Biopython-dev] Re: BioSQL and PostgreSQL

[Yves Bastide]

Oops!
Yves Bastide wrote in private, missing the list:
> Hi,
> 
> Brad Chapman wrote:
> 
>> Hi Yves;
>>
>>
> [...]
> 
> Then let's use the current schema, including the not-done-yet 
> replacement of reference.reference_medline by reference.document_id, ok? 
> I'll send here my current diffs.
> 
>>
>>> Yep.  But my implementation is a hack: it hardcodes the name of two
>>> adaptors, MySQLdb and psycopg -- while there are at least 3 ones for
>>> postgresql.
>>
>>
>>
>> No worries on that front from me -- psycopg is a semi-official Postgres
>> driver, I reckon, since it's used in Zope. My only beef with it is that
>> the name is damn hard to type properly.
> 
> 
> Yes, but Zope won't be supported by biopython -- it still uses python 2.1.
> 
> [...]
> 
>>
>> Brad
> 
> 
> yves
> 
>