[Biopython-dev] Failed Tests

[Gavin Crooks]

A bunch of biopython tests are failing or being skipped on my machine.
Anyone know whats up?

Gavin



test_Crystal ... Skipping test because of import error: No module named
Hetero
ok
test_KDTree ... Skipping test because of import error: No module named
_KDTreecok
test_cdd ... Skipping test because of import error: cannot import name
remove_leading_whitespace
test_ndb ... Skipping test because of import error: cannot import name
Hetero
 
======================================================================
FAIL: test_BioSQL
----------------------------------------------------------------------
Traceback (most recent call last):
  File "run_tests.py", line 131, in runTest
    self.runSafeTest()
  File "run_tests.py", line 168, in runSafeTest
    expected_handle)
  File "run_tests.py", line 268, in compare_output
    assert expected_line == output_line, \
AssertionError:
Output  : 'Load SeqRecord objects into a BioSQL database. ... ERROR\n'
Expected: 'Load SeqRecord objects into a BioSQL database. ... ok\n'
======================================================================
FAIL: test_align
----------------------------------------------------------------------
Traceback (most recent call last):
  File "run_tests.py", line 131, in runTest
    self.runSafeTest()
  File "run_tests.py", line 168, in runSafeTest
    expected_handle)
  File "run_tests.py", line 268, in compare_output
    assert expected_line == output_line, \
AssertionError:
Output  : 'testing reading and writing fasta format...\n'
Expected: '0 T 2.000\n'
----------------------------------------------------------------------
Ran 60 tests in 187.649s