[Biopython-dev] Notification: incoming/74
jchang at smi.stanford.edu
Tue Jul 9 12:50:18 EDT 2002
Thanks for the bug report. This is fixed in the latest CVS version of
the file. If you have not already fixed the bug, please download the
SProt.py file from anonymous cvs.
> >From Oyvind.Edvardsen at hitos.no Tue Jul 9 09:27:33 2002
> Received: from localhost (localhost [127.0.0.1])
> by pw600a.bioperl.org (8.12.2/8.12.2) with ESMTP id g69DRXGV009802
> for <biopython-bugs at pw600a.bioperl.org>; Tue, 9 Jul 2002 09:27:33 -0400
> Date: Tue, 9 Jul 2002 09:27:33 -0400
> Message-Id: <200207091327.g69DRXGV009802 at pw600a.bioperl.org>
> From: Oyvind.Edvardsen at hitos.no
> To: biopython-bugs at bioperl.org
> Subject: SwissProt parse error
> Full_Name: Øyvind Edvardsen
> Module: SwissProt
> Version: biopython-1.00a4.win32-py2.2.exe
> OS: Win98SE
> Submission from: pc110-137.tromso.avidi.online.no (184.108.40.206)
> When parsing CCR4_HUMAN (P30991) from the
> current SwissProt release a SyntaxError exception is thrown at the RN 
> chunk of data.
> Apparently the parser expects to find only 1 line of RP data following. In this
> case (#6) the RP stuff continues on a second line. The error message shown is:
> Line does not start with RA.
> RP CORECEPTOR FUNCTION.
> Solution: allow RP to span more than 1 line.
> Keep up the good work!
> Øyvind E.
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