[Biopython-dev] KD tree module

Brad Chapman chapmanb at arches.uga.edu
Wed Jul 3 14:27:20 EDT 2002

> > BTW, there a lot of Biopython tests that fail due to trivial reasons like:
> > 
> > test test_ParserSupport failed -- 
> > Writing: 'Ran 3 tests in 0.005s', expected: 'Ran 3 tests in 0.111s'

> Hey, good catch.  It looks like there's some testing code here that
> uses unittest.py, which writes out how long some code took.  This is
> breaking from run to run.

I'm confused, I should have this all worked out, really :-) 
How are you guys running the tests?

With current biopython CVS, I just do:
[biopython]$ cd Tests
[Tests]$ python run_tests.py --no-gui
test_BioSQL ... ok

and so on, and things work fine. Maybe I'm missing something or just
crazy (or both!)?

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