[Biopython-dev] KD tree module
thamelry at vub.ac.be
Tue Jul 2 08:39:02 EDT 2002
Added regression test.
The KD tree module now does:
-Find all neighbors within radius r of given point p
-Find all point pairs within radius r of each other
It finds all bonds in the large ribosomal subunit (90000
atoms) in under 4 seconds.
BTW, there a lot of Biopython tests that fail due to trivial reasons like:
test test_ParserSupport failed --
Writing: 'Ran 3 tests in 0.005s', expected: 'Ran 3 tests in 0.111s'
Thomas Hamelryck Vrije Universiteit Brussel (VUB)
Intitute for Molecular Biology ULTR Department
Paardenstraat 65 1640 Sint-Gensius-Rode Belgium
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