[Biopython-dev] bug: swissprot record parser errors

[Jeffrey Chang]

Are you using the updated SProt module from the CVS?  The format's
changed a bit since the last release of biopython, and some problems
have been fixed since then.

Jeff


On Mon, Aug 19, 2002 at 04:29:11PM +0000, louis_coilliot wrote:
> This little program:
> 
> 
> 
> #!/usr/bin/env python
> # reading a SwissProt entry from a file
> 
> from Bio.SwissProt import SProt
> from sys import *
> 
> try:
>     handle = open(argv[1])
>     sp = SProt.Iterator(handle, SProt.RecordParser())
>     record = sp.next()
>     print record.entry_name
>     print
> except:
>     print "error"
> 
> 
> 
> doesn't work with some records, for example:
> http://www.expasy.ch/cgi-bin/get-sprot-raw.pl?O75398
> http://www.expasy.ch/cgi-bin/get-sprot-raw.pl?P41964
> 
> I don't know why. Any idea ?
>                              
> 
> _______________________________________________
> Biopython-dev mailing list
> Biopython-dev at biopython.org
> http://biopython.org/mailman/listinfo/biopython-dev