[Biopython-dev] Biopython 1.00a2 release

[Brad Chapman]

Hi Iddo;

> FSSP, Align, and SubsMat have all been committed for the new version. Inc.
> updated regression tests.

Sweet. Thanks for the fixes and updates.

Can you also update the generated output in Tests/output for
test_FSSP, test_align and test_SubsMat if you've verified it to be
correct (you can do 'python run_tests.py -g test_FSSP' to get the
output updated). 

Right now running python run_tests.py in the Tests directory gives the
following errors:

======================================================================
ERROR: test_FSSP
----------------------------------------------------------------------
Traceback (most recent call last):
  File "run_tests.py", line 155, in runTest
    raise IOError, "Warning: Can't open %s for test %s" % \
IOError: Warning: Can't open ./output/test_FSSP for test test_FSSP
======================================================================
FAIL: test_SubsMat
----------------------------------------------------------------------
Traceback (most recent call last):
  File "run_tests.py", line 153, in runTest
    expected_handle)
  File "run_tests.py", line 247, in compare_output
    assert expected_line == output_line, \
AssertionError: 
Output  : '\n'
Expected: 'A 1.60\n'
======================================================================
FAIL: test_align
----------------------------------------------------------------------
Traceback (most recent call last):
  File "run_tests.py", line 153, in runTest
    expected_handle)
  File "run_tests.py", line 247, in compare_output
    assert expected_line == output_line, \
AssertionError: 
Output  : 'part of alignment: 88.4230990854\n'
Expected: 'part of alignment: 1.57690091462\n'
----------------------------------------------------------------------

Thanks again for the updates!
Brad