[Biopython-dev] Re: [BioPython] tests failing

[Mark Robinson]

Thanks Jeff,

I'll get stuck in using it then ;). Hope thats been some help, I have to 
say so far I am really impressed by what I am seeing.
Great work!!

blobby

Jeffrey Chang wrote:

> Hey Mark,
> 
> Thanks for letting us know about these.  I'm moving this thread onto 
> the "biopython-dev" list, as it's probably more appropriate there.
> 
>> Failure: test_SubsMat
>> 
>> AssertionError:
>> output: 'M0.00 0.40 0.70 0.80 1.00\n'
>> Expected: 'M -0.00 0.40 0.70 0.80 1.00\n'
> 
> 
> It looks like this is from a difference in how windows and Iddo's OS 
> handles 0's.  It's probably not serious, but should be fixed.  Iddo, 
> can you write some code that will check for this?
> 
> 
>> Error: test_gobase
>> 
>> from Bio import Sequence
>> ImportError: cannot import name Sequence
>> 
>> Error: test_rebase
>> 
>> from Bio import Sequence
>> ImportError: cannot import name Sequence
> 
> 
> These seem to be from some legacy code that hasn't been cleaned up. 
> It's now fixed in the CVS and will be incorporated into the next release.
> 
> 
> 
>> Failure: test_prodoc
>> 
>> AssertionError:
>> Output: 'J. \n'
>> Expected: 'J. \n'
> 
> 
> Brad, this looks pretty odd.  Is it a newline problem?
> 
> Jeff
> 
> 
>