chapmanb at arches.uga.edu
Tue Nov 14 00:18:58 EST 2000
> Okay, over the weekend I ended up not doing the work I was paid for
> and instead worked on Martel.
Join the club :-). Seriously, thanks for this -- the new version looks
> Migrated to Python 2.0 and its xml package. No longer runs under
> older (1.x) Pythons.
Thanks for catching all of the changes I missed for 2.0 support.
This new version flushed out some errors I made in my Clustalw parser
(changes are committed to CVS).
> Experimental Iterator support ("make_iterator") as an alternate for
> the pure SAX callback method.
I had a chance to play with this a little, and seem to be grokking
things a lot better. I modified my Martel based Fasta.py parser to
use an iterator, so it now acts a little more like the biopython
Fasta parser and only reads one record if a file is passed to it.
Looks nice, although I definately need to play with it a lot more.
> For people like Brad who are learning how to use Martel, try
> "expression.make_parser(debug_level = 1)" or debug_level = 2. That
> really helps pin down where an error is likely located.
This is a really nice feature. Thanks, this'll be a big help.
BTW, I took a minute to distutilize Martel (takes about as long as
copying everything to site-packages :-), which I guess we'll need
to do anyways to include it in the next release. I put everything into
a Martel top level package, and install it like that. Anyways, do you
Thanks again for the new release.
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