[Biopython-dev] Notification: incoming/8

[Jeffrey Chang]

On Sun, 9 Jul 2000, Cayte wrote:

> > 
> > Message summary for PR#8
> > From: katel at worldpath.net
> > Subject: nr_false_neg initialized as a tuple
> > Date: Sat, 8 Jul 2000 20:37:37 -0400
> > 0 replies 0 followups
> > Notes: Hmmm...  nr_false_neg should be initialized to 'None', so I'll fix that.
> > 
> > However, not setting a value specified in a record is a more serious problem.  
> > Which prosite file is this happening on?
> > 
> > 
>   I saw it on all the files in my Test\Prosite directory.
> 
> 
>                                                      Cayte


I still can't duplicate it:

taiyang:~/remotecvs/biopython/Tests/Prosite> python
Python 1.5.2 (#1, Sep 26 1999, 16:32:39) [C] on sunos5
Copyright 1991-1995 Stichting Mathematisch Centrum, Amsterdam
>>> from Bio.Prosite import Prosite
>>> rec = Prosite.RecordParser().parse(open('ps001'))
>>> print rec.nr_false_neg
33
>>> rec = Prosite.RecordParser().parse(open('ps00107.txt'))
>>> print rec.nr_false_neg
142
>>> 


Can you send some code that will reproduce the bug?

Jeff